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1

Morphological correlates of ecological specialization in darters

Lawrence M. Page, David L. Swofford

Journal:

Environmental Biology of Fishes

Year:

1984

Language:

english

File:

PDF, 2.03 MB

english, 1984

2

Taxon sampling revisited

Poe, Steven, Swofford, David L.

Journal:

Year:

1999

Language:

english

File:

PDF, 211 KB

english, 1999

3

Geographic Origins of Human Mitochondrial DNA: Phylogenetic Evidence from Control Region Sequences

David R. Maddison, Maryellen Ruvolovo and David L. Swofford

Journal:

Systematic Biology

Year:

1992

Language:

english

File:

PDF, 1.49 MB

english, 1992

4

PhyloOncology: Understanding cancer through phylogenetic analysis

Somarelli, Jason A., Ware, Kathryn E., Kostadinov, Rumen, Robinson, Jeffrey M., Amri, Hakima, Abu-Asab, Mones, Fourie, Nicolaas, Diogo, Rui, Swofford, David, Townsend, Jeffrey P.

Journal:

Biochimica et Biophysica Acta (BBA) - Reviews on Cancer

Year:

2016

Language:

english

File:

PDF, 889 KB

english, 2016

5

Numerical Recipes: The Art of Scientific Computing. FORTRAN and Pascal Versions. William H. Press, Brian P. Flannery , Saul A. Teukolsky , William T. Vetterling Numerical Recipes Example Book. FORTRAN Version. William T. Vetterling , Saul A. Teukolsky , William H. Press, Brian P. Flannery Numerical Recipes: The Art of Scientific Computing. FORTRAN and Pascal . Numerical Recipes Example Book. Pascal Version. William T. Vetterling , Saul A. Teukolsky , William H. Press, Brian P. Flannery Numerical Recipes in C: The Art of Scientific Computing. William H. Press, Brian P. Flannery , Sau

Rohlf, F. James, Swofford, David

Journal:

Quarterly Review of Biology

Year:

1989

Language:

english

File:

PDF, 387 KB

english, 1989

6

Fluorescence resonance energy transfer analysis of cell surface receptor interactions and signaling using spectral variants of the green fluorescent protein

Francis Ka-Ming Chan, Richard M. Siegel, David Zacharias, Ruth Swofford, Kevin L. Holmes, Roger Y. Tsien, Michael J. Lenardo

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 322 KB

english, 2001

7

Overtone absorption spectra of gaseous amines: CH3NH2, (CH3)2NH, Et2NH, and N2H4. Conformationally non-equivalent CH and NH local mode oscillators

Howard L. Fang, Robert L. Swofford, David A.C. Compton

Journal:

Chemical Physics Letters

Year:

1984

Language:

english

File:

PDF, 578 KB

english, 1984

8

Decoupling sales and profits: An incentive approach that works

David Moskovitz, Gary Swofford

Journal:

The Electricity Journal

Year:

1991

Language:

english

File:

PDF, 816 KB

english, 1991

9

Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA

Frank E. Anderson, David L. Swofford

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 440 KB

english, 2004

10

Book reviews

Frank Critchley, Lawrence E. Jones, Hubert Feger, Tapas K. Sen, David L. Swofford, Arthur J. Kendall, Frank Critchley, William H. E. Day, Gilbert Saporta, George F. Estabrook, John A. Sonquist, Charle

Journal:

Journal of Classification

Year:

1986

Language:

english

File:

PDF, 2.57 MB

english, 1986

11

Evolution of the Mitochondrial Cytochrome Oxidase II Gene in Collembola

Francesco Frati, Chris Simon, Jack Sullivan, David L. Swofford

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 291 KB

english, 1997

12

Uneconomical Diagnosis of Cladograms: Comments on Wheeler and Nixon's Method for Sankoff Optimization

David L. Swofford, Mark E. Siddall

Journal:

Year:

1997

Language:

english

File:

PDF, 159 KB

english, 1997

13

The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life

E. Kurt Lienau, Rob DeSalle, Marc Allard, Eric W. Brown, David Swofford, Jeffrey A. Rosenfeld, Indra N. Sarkar, Paul J. Planet

Journal:

Year:

2011

Language:

english

File:

PDF, 1.77 MB

english, 2011

14

Coelacanth's relationships

STOCK, DAVID W., SWOFFORD, DAVID L.

Journal:

Year:

1991

File:

PDF, 236 KB

1991

15

Forum-Uneconomical Diagnosis of Cladograms: Comments on Wheeler and Nixon's Method for Sankoff Optimization

David L. Swofford, Mark E. Siddall

Journal:

Year:

1997

Language:

english

File:

PDF, 162 KB

english, 1997

16

Reconstructing ancestral character states under Wagner parsimony

David L. Swofford, Wayne P. Maddison

Journal:

Mathematical Biosciences

Year:

1987

Language:

english

File:

PDF, 1.71 MB

english, 1987

17

Back to the future: Bayesian inference arrives in phylogenetics

Paul O. Lewis, David L. Swofford

Journal:

Trends in Ecology & Evolution

Year:

2001

Language:

english

File:

PDF, 88 KB

english, 2001

18

Partitioning and Combining Data in Phylogenetic Analysis

J. J. Bull, John P. Huelsenbeck, Clifford W. Cunningham, David L. Swofford and Peter J. Waddell

Journal:

Systematic Biology

Year:

1993

Language:

english

File:

PDF, 1.42 MB

english, 1993

19

Studies in Neotropical Ornithology Honoring Ted Parker || Evolutionary Relationships among the Potoos (Nyctibiidae) Based on Isozymes

Robb T. Brumfield, David L. Swofford and Michael J. Braun

Journal:

Ornithological Monographs

Year:

1997

Language:

english

File:

PDF, 2.35 MB

english, 1997

20

NEXUS: An Extensible File Format for Systematic Information

Maddison, David R., Swofford, David L., Maddison, Wayne P.

Journal:

Systematic Biology

Year:

1997

Language:

english

File:

PDF, 3.22 MB

english, 1997

21

Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

Swofford, Jack Sullivan, David L.

Journal:

Systematic Biology

Year:

2001

Language:

english

File:

PDF, 183 KB

english, 2001

22

Natural Hybridization between Genera That Diverged from Each Other Approximately 60 Million Years Ago

Rothfels, Carl J., Johnson, Anne K., Hovenkamp, Peter H., Swofford, David L., Roskam, Harry C., Fraser-Jenkins, Christopher R., Windham, Michael D., Pryer, Kathleen M.

Journal:

American Naturalist

Year:

2015

Language:

english

File:

PDF, 418 KB

english, 2015

23

Hastings Ratio of the LOCAL Proposal Used in Bayesian Phylogenetics

Holder, Mark, Lewis, Paul, Swofford, David, Larget, Bret

Journal:

Systematic Biology

Year:

2005

Language:

english

File:

PDF, 256 KB

english, 2005

24

Inferring Evolutionary Trees from Gene Frequency Data Under the Principal of Maximum Parsimony

Swofford, David L., Berlocher, Stewart H.

Journal:

Systematic Zoology

Year:

1987

Language:

english

File:

PDF, 2.84 MB

english, 1987

25

A Fast Method for Approximating Maximum Likelihoods of Phylogenetic Trees from Nucleotide Sequences

S. ROGERS DAVID L. SWOFFORD, JAMES

Journal:

Systematic Biology

Year:

1998

Language:

english

File:

PDF, 391 KB

english, 1998

26

An Enzymatic Atavist Revealed in Dual Pathways for Water Activation

Min, Donghong, Josephine, Helen R., Li, Hongzhi, Lakner, Clemens, MacPherson, Iain S., Naylor, Gavin J. P., Swofford, David, Hedstrom, Lizbeth, Yang, Wei, Herschlag, Daniel

Journal:

Year:

2008

Language:

english

File:

PDF, 630 KB

english, 2008

27

Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

Swofford, David L., Waddell, Peter J., Huelsenbeck, John P., Foster, Peter G., Lewis, Paul O., Rogers, James S.

Journal:

Systematic Biology

Year:

2001

Language:

english

File:

PDF, 394 KB

english, 2001

28

Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

L. Swofford, Peter J. Waddell, John, David

Journal:

Systematic Biology

Year:

2001

Language:

english

File:

PDF, 375 KB

english, 2001

29

Hobgoblin of phylogenetics?

Hillis, David M., Huelsenbeck, John P., Swofford, David L

Journal:

Year:

1994

File:

PDF, 303 KB

1994

30

Variation and Systematics of Etheostoma whipplei, The Redfin Darter (Pisces: Percidae)

Michael E. Retzer, Lawrence M. Page and David L. Swofford

Journal:

Year:

1986

Language:

english

File:

PDF, 1.45 MB

english, 1986

31

Numerical Taxonomy. Proceedings of the NATO Advanced Study Institute Held at Bad Windsheim, Germany, July 4-16, 1982.by Joseph Felsenstein

Review by: David L. Swofford

Journal:

Quarterly Review of Biology

Year:

1985

Language:

english

File:

PDF, 400 KB

english, 1985

32

Evolutionary Relationships within the Etheostoma squamiceps Complex (Percidae; Subgenus Catonotus) with Descriptions of Five New Species

Lawrence M. Page, Patrick A. Ceas, David L. Swofford and Donald G. Buth

Journal:

Year:

1992

Language:

english

File:

PDF, 4.65 MB

english, 1992

33

Numerical Recipes: The Art of Scientific Computing. FORTRAN and Pascal Versions.by William H. Press; Brian P. Flannery; Saul A. Teukolsky; William T. Vetterling;Numerical Recipes Example Book. FORTRAN Version.by William T. Vetterling; Saul A. Teukolsky; William H. Press; Brian P. Flannery;Numerical Recipes: The Art of Scientific Computing. FORTRAN and Pascal;Numerical Recipes Example Book. Pascal Version.by William T. Vetterling; Saul A. Teukolsky; William H. Press; Brian P. Flannery;Numerical Recipes in C: The Art of Scientific Computing.by William H. Press; Brian P. Flannery; Saul A. Teukolsky; William T. Vetterling;Numerical Recipes Example Book (C).by William T. Vetterling; Saul A. Teukolsky; William H. Press; Brian P. Flannery

Review by: F. James Rohlf and David Swofford

Journal:

Quarterly Review of Biology

Year:

1989

Language:

english

File:

PDF, 478 KB

english, 1989

34

Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

David L. Swofford, Peter J. Waddell, John P. Huelsenbeck, Peter G. Foster, Paul O. Lewis and James S. Rogers

Journal:

Systematic Biology

Year:

2001

Language:

english

File:

PDF, 658 KB

english, 2001

35

Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions about Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

Jack Sullivan and David L. Swofford

Journal:

Systematic Biology

Year:

2001

Language:

english

File:

PDF, 428 KB

english, 2001

36

The Topology-Dependent Permutation Test for Monophyly Does Not Test for Monophyly

David L. Swofford, Jeffrey L. Thorne, Joseph Felsenstein and Brian M. Wiegmann

Journal:

Systematic Biology

Year:

1996

Language:

english

File:

PDF, 658 KB

english, 1996

37

Geographic Origins of Human Mitochondrial DNA: Phylogenetic Evidence from Control Region Sequences

David R. Maddison, Maryellen Ruvolovo and David L. Swofford

Journal:

Systematic Biology

Year:

1992

File:

PDF, 1.49 MB

1992

38

Searching for Phylogenetic Trees Under the Frequency Parsimony Criterion: An Approximation Using Generalized Parsimony

Stewart H. Berlocher and David L. Swofford

Journal:

Systematic Biology

Year:

1997

Language:

english

File:

PDF, 687 KB

english, 1997

39

A TRANSARTICULAR APPROACH TO BLOCKADE OF THE GANGLION IMPAR (GANGLION OF WALTHER)

Swofford, John B., Ratzman, David M.

Journal:

Regional Anesthesia and Pain Medicine

Year:

1998

File:

PDF, 207 KB

1998

40

Is Character Weighting a Panacea for the Problem of Data Heterogeneity in Phylogenetic Analysis?

John P. Huelsenbeck, David L. Swofford, Clifford W. Cunningham, J. J. Bull and Peter J. Waddell

Journal:

Systematic Biology

Year:

1994

Language:

english

File:

PDF, 564 KB

english, 1994

41

Hastings Ratio of the LOCAL Proposal Used in Bayesian Phylogenetics

Mark T. Holder, Paul O. Lewis, David L. Swofford and Bret Larget

Journal:

Systematic Biology

Year:

2005

Language:

english

File:

PDF, 1.03 MB

english, 2005

42

A Fast Method for Approximating Maximum Likelihoods of Phylogenetic Trees from Nucleotide Sequences

James S. Rogers and David L. Swofford

Journal:

Systematic Biology

Year:

1998

Language:

english

File:

PDF, 1.33 MB

english, 1998

43

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Daniel L. Ayres, Aaron Darling, Derrick J. Zwickl, Peter Beerli, Mark T. Holder, Paul O. Lewis, John P. Huelsenbeck, Fredrik Ronquist, David L. Swofford, Michael P. Cummings, Andrew Rambaut and Marc A

Journal:

Systematic Biology

Year:

2012

Language:

english

File:

PDF, 761 KB

english, 2012

44

The Akaike Information Criterion Will Not Choose the No Common Mechanism Model

Mark T. Holder, Paul O. Lewis, David L. Swofford and Olivier Gascuel

Journal:

Systematic Biology

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

45

Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family

White, William T., Corrigan, Shannon, Yang, Lei, Henderson, Aaron C., Bazinet, Adam L., Swofford, David L., Naylor, Gavin J. P.

Journal:

Zoological Journal of the Linnean Society

Year:

2017

Language:

english

File:

PDF, 855 KB

english, 2017

46

BIOSYS-1: a FORTRAN program for the comprehensive analysis of electrophoretic data in population genetics and systematics

Swofford, David L., Selander, Richard B.

Journal:

Journal of Heredity

Year:

1981

Language:

english

File:

PDF, 326 KB

english, 1981

47

An Improved microRNA Annotation of the Canine Genome

Penso-Dolfin, Luca, Swofford, Ross, Johnson, Jeremy, Alföldi, Jessica, Lindblad-Toh, Kerstin, Swarbreck, David, Moxon, Simon, Di Palma, Federica, Zheng, Yun

Journal:

Year:

2016

Language:

english

File:

PDF, 2.06 MB

english, 2016

48

Contemporaneous radiations of fungi and plants linked to symbiosis

Lutzoni, François, Nowak, Michael D., Alfaro, Michael E., Reeb, Valérie, Miadlikowska, Jolanta, Krug, Michael, Arnold, A. Elizabeth, Lewis, Louise A., Swofford, David L., Hibbett, David, Hilu, Khidir,

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 664 KB

english, 2018

49

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Ayres, Daniel L, Cummings, Michael P, Baele, Guy, Darling, Aaron E, Lewis, Paul O, Swofford, David L, Huelsenbeck, John P, Lemey, Philippe, Rambaut, Andrew, Suchard, Marc A

Journal:

Systematic Biology

Year:

2019

File:

PDF, 402 KB

2019